I want to execute a script that starts with
library(dplyr) library(lubridate) library(ggplot2) I started out with regular r-base-core and r-cran-lubridate installed. I got:
Error in mutate_impl(.data, dots) : Evaluation error: `as_dictionary()` is defunct as of rlang 0.3.0. Please use `as_data_pronoun()` instead. (the code itself doesn't use mutate_impl it seems to be this issue , suggesting an update of dplyr
r version was R version 3.4.4 (2018-03-15) for dplyr I didn't know how to find out.
So I changed the source as described elsewhere: added deb bionic-cran35/ to /etc/apt/sources.list
sudo apt-get update sudo apt-get install r-base sudo apt-get install r-cran-dplyr Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: r-cran-dplyr : Depends: r-api-3.4 Depends: r-cran-assertthat but it is not going to be installed Depends: r-cran-bindrcpp (>= 0.2) but it is not going to be installed Depends: r-cran-glue (>= 1.1.1) but it is not going to be installed Depends: r-cran-magrittr but it is not going to be installed Depends: r-cran-pkgconfig but it is not going to be installed Depends: r-cran-rlang (>= 0.1.2) but it is not going to be installed Depends: r-cran-r6 but it is not going to be installed Depends: r-cran-rcpp (>= 0.12.7) but it is not going to be installed Depends: r-cran-tibble (>= 1.3.1) but it is not going to be installed E: Unable to correct problems, you have held broken packages. I ran
sudo apt-get remove r-* sudo apt-get clean sudo apt-get autoclean sudo apt-get update sudo apt-get install r-base sudo apt-get install r-cran-dplyr but nothing changed.
Installing it from within the R shell doesn't work either:
> install.packages("dplyr") Installing package into ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5’ (as ‘lib’ is unspecified) also installing the dependencies ‘pillar’, ‘purrr’, ‘bindrcpp’, ‘tibble’, ‘tidyselect’ trying URL ' downloaded 100 KB trying URL ' downloaded 123 KB trying URL ' downloaded 10212 bytes trying URL ' downloaded 107 KB trying URL ' downloaded 21 KB trying URL ' downloaded 702 KB * installing *source* package ‘pillar’ ... ** package ‘pillar’ successfully unpacked and MD5 sums checked ** R ** byte-compile and prepare package for lazy loading Error : package ‘rlang’ was installed by an R version with different internals; it needs to be reinstalled for use with this R version ERROR: lazy loading failed for package ‘pillar’ * removing ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5/pillar’ * installing *source* package ‘bindrcpp’ ... ** package ‘bindrcpp’ successfully unpacked and MD5 sums checked ** libs g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I. -I"/home/_/R/x86_64-pc-linux-gnu-library/3.5/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-oUvOgu/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I. -I"/home/_/R/x86_64-pc-linux-gnu-library/3.5/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-oUvOgu/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c create.cpp -o create.o g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I. -I"/home/_/R/x86_64-pc-linux-gnu-library/3.5/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-oUvOgu/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plogr.cpp -o plogr.o g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I. -I"/home/_/R/x86_64-pc-linux-gnu-library/3.5/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-oUvOgu/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test.cpp -o test.o g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o bindrcpp.so RcppExports.o create.o plogr.o test.o -L/usr/lib/R/lib -lR installing to /home/t/R/x86_64-pc-linux-gnu-library/3.5/bindrcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading Error : package ‘Rcpp’ was installed by an R version with different internals; it needs to be reinstalled for use with this R version ERROR: lazy loading failed for package ‘bindrcpp’ * removing ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5/bindrcpp’ ERROR: dependency ‘pillar’ is not available for package ‘tibble’ * removing ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5/tibble’ ERROR: dependency ‘tibble’ is not available for package ‘purrr’ * removing ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5/purrr’ ERROR: dependency ‘purrr’ is not available for package ‘tidyselect’ * removing ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5/tidyselect’ ERROR: dependencies ‘bindrcpp’, ‘tibble’, ‘tidyselect’ are not available for package ‘dplyr’ * removing ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5/dplyr’ The downloaded source packages are in ‘/tmp/Rtmpxim56P/downloaded_packages’ Warning messages: 1: In install.packages("dplyr") : installation of package ‘pillar’ had non-zero exit status 2: In install.packages("dplyr") : installation of package ‘bindrcpp’ had non-zero exit status 3: In install.packages("dplyr") : installation of package ‘tibble’ had non-zero exit status 4: In install.packages("dplyr") : installation of package ‘purrr’ had non-zero exit status 5: In install.packages("dplyr") : installation of package ‘tidyselect’ had non-zero exit status 6: In install.packages("dplyr") : installation of package ‘dplyr’ had non-zero exit status > 1 Answer
I also could not install dplyr in Ubuntu 18.04. I had R version 3.6.1, which seemingly caused the problem.
I followed this solution and did the following
sudo add-apt-repository ppa:marutter/c2d4u3.5 sudo apt update sudo apt install r-cran-dplyr which did the trick.
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